STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0546PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: sco:SCO5218 integral membrane protein. (451 aa)    
Predicted Functional Partners:
Acel_0620
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ade:Adeh_1576 diguanylate cyclase (GGDEF domain).
 
 0.971
Acel_1161
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tfu:Tfu_2218 GGDEF.
 
 
 0.970
Acel_2099
PFAM: EAL domain protein; response regulator receiver; KEGG: tbd:Tbd_1061 putative diguanylate phosphodiesterase (EAL domain) with GAF sensor.
  
 0.942
Acel_0165
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; histidine kinase, HAMP region domain protein; KEGG: ade:Adeh_2704 diguanylate cyclase (GGDEF domain).
 
 0.922
Acel_0932
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nfa:nfa1410 hypothetical protein.
 
 
 0.916
Acel_0547
KEGG: tfu:Tfu_0551 putative lipoprotein.
    
0.893
Acel_1275
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tte:TTE1717 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
    
 0.803
Acel_0096
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pae:PA3177 hypothetical protein.
 
 
 0.768
Acel_1420
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: bja:bll0955 hypothetical protein.
 
 
 0.706
Acel_0548
PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gka:GK1599 acetyl-CoA carboxylase.
       0.639
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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