STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0566KEGG: sco:SCO5254 superoxide dismutase. (135 aa)    
Predicted Functional Partners:
Acel_0567
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein.
 
   
 0.921
Acel_2094
PFAM: Catalase domain protein; KEGG: sma:SAV3224 putative catalase; Belongs to the catalase family.
     
 0.529
Acel_0565
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sco:SCO5244 anti-sigma factor.
       0.518
Acel_0561
PFAM: diacylglycerol kinase, catalytic region; KEGG: sco:SCO5241 hypothetical protein.
       0.429
Acel_0562
Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain-like protein; KEGG: gka:GK1441 hypothetical protein.
       0.429
Acel_0563
Hypothetical protein.
       0.429
Acel_0564
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: fra:Francci3_3755 sigma 28 subunit; Belongs to the sigma-70 factor family.
       0.429
whiB-2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
     0.424
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.