STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0605PFAM: zinc/iron permease; KEGG: fra:Francci3_2368 zinc/iron permease. (276 aa)    
Predicted Functional Partners:
Acel_0402
SMART: Pyrrolo-quinoline quinone; KEGG: spn:SP1772 cell wall surface anchor family protein.
  
     0.638
Acel_0904
KEGG: fra:Francci3_2206 hypothetical protein.
  
     0.626
Acel_0252
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tfu:Tfu_2703 putative cytochrome c biogenesis membrane protein.
   
    0.582
Acel_0604
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sma:SAV5742 calcium-binding protein.
       0.531
Acel_0934
TIGRFAM: conserved hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; KEGG: sco:SCO2190 hypothetical protein.
  
    0.517
Acel_0443
KEGG: fra:Francci3_0362 conserved hypothetical protein.
  
  
 0.506
Acel_0911
PFAM: Siderophore-interacting protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: tfu:Tfu_1860 iron-chelator utilization protein.
   
    0.504
Acel_1423
Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: ava:Ava_4152 dienelactone hydrolase.
 
    0.475
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.414
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.