STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0635PFAM: glycosyl transferase, family 2; KEGG: putative inner membrane glycosyltransferase. (471 aa)    
Predicted Functional Partners:
Acel_1917
PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase.
  
 0.863
Acel_0634
PFAM: LmbE family protein; KEGG: lxx:Lxx09320 hypothetical protein.
 
     0.808
Acel_0636
Hypothetical protein.
       0.773
Acel_1253
PFAM: Tetratricopeptide TPR_4; KEGG: tfu:Tfu_2042 hypothetical protein.
  
 
 0.748
Acel_0638
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mth:MTH837 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.733
Acel_0637
PFAM: protein of unknown function DUF201; KEGG: cac:CAC2189 hypothetical protein.
  
 
 0.653
Acel_1420
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: bja:bll0955 hypothetical protein.
 
  
 0.644
Acel_0639
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pae:PA5281 probable hydrolase.
 
     0.643
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
     
 0.466
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
       0.449
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.