STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0743KEGG: lxx:Lxx07990 membrane protein. (139 aa)    
Predicted Functional Partners:
Acel_0742
TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: sco:SCO2614 folylpolyglutamate synthase.
  
  
 0.884
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
     
 0.858
Acel_0744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_0874 ABC transporter related.
       0.689
Acel_0461
KEGG: sma:SAV5044 secreted protein.
  
     0.676
Acel_2014
KEGG: sma:SAV4558 hypothetical protein.
  
     0.665
Acel_1064
KEGG: sco:SCO1219 integral membrane protein.
  
     0.609
Acel_0750
PFAM: Rod shape-determining protein MreD; KEGG: sco:SCO2609 rod shape-determining protein.
 
     0.606
Acel_1878
PFAM: HesB/YadR/YfhF-family protein.
  
     0.568
Acel_1419
KEGG: sco:SCO5843 hypothetical protein.
  
     0.544
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
 0.529
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.