STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0895PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB4395 probable macrophage infectivity potentiator protein Mip. (205 aa)    
Predicted Functional Partners:
Acel_0894
KEGG: dsy:DSY0977 hypothetical protein.
 
     0.813
Acel_0897
PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:blr6047 putative oxidoreductase protein.
 
     0.811
Acel_0896
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: pae:PA1602 probable oxidoreductase.
       0.773
Acel_0891
PFAM: Carboxymuconolactone decarboxylase; KEGG: bte:BTH_I0996 carboxymuconolactone decarboxylase family protein.
  
     0.729
Acel_0893
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; KEGG: ypm:pMT054 putative periplasmic protein.
  
    0.568
Acel_0182
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sma:SAV909 putative RNA polymerase ECF-subfamily sigma factor.
 
    0.511
Acel_0898
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase.
       0.467
Acel_0481
PFAM: regulatory protein, TetR; KEGG: sma:SAV705 TetR-family transcriptional regulator.
 
     0.458
Acel_0892
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator.
  
    0.430
Acel_1198
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV1292 putative 2,4-dienoyl-CoA reductase.
     
 0.407
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.