STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0900PFAM: protein of unknown function DUF34; KEGG: mpa:MAP1982c hypothetical protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (393 aa)    
Predicted Functional Partners:
Acel_0902
PFAM: ribonuclease H; Phosphoglycerate mutase; KEGG: tfu:Tfu_1953 hypothetical protein.
  
 0.905
Acel_0901
PFAM: protein of unknown function DUF164; KEGG: fra:Francci3_1437 protein of unknown function DUF164.
  
  
 0.804
Acel_0899
Hypothetical protein.
       0.773
Acel_2152
PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1641 valine-pyruvate aminotransferase.
   
    0.517
Acel_0415
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: sma:SAV946 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.478
Acel_0898
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase.
       0.478
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.