STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0924PFAM: RDD domain containing protein; KEGG: fra:Francci3_3141 RDD. (116 aa)    
Predicted Functional Partners:
Acel_0958
Putative integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.652
Acel_0923
L-glutamine synthetase; KEGG: sma:SAV6005 putative glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp.
  
   0.601
Acel_1419
KEGG: sco:SCO5843 hypothetical protein.
  
     0.530
Acel_0962
Menaquinol-cytochrome c reductase iron-sulfur subunit precursor; PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO2149 Rieske iron-sulfur protein.
  
     0.519
Acel_0963
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor; PFAM: cytochrome c, class I; KEGG: sco:SCO2150 cytochrome C heme-binding subunit.
  
     0.497
Acel_1776
PFAM: UvrD/REP helicase; SMART: AAA ATPase; KEGG: tfu:Tfu_0523 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.497
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
    0.483
Acel_2024
PFAM: thiamineS protein; KEGG: fra:Francci3_0445 thiamine S.
  
     0.434
Acel_0879
Transcriptional regulator, CdaR family; KEGG: sco:SCO2386 hypothetical protein.
  
     0.426
Acel_0949
KEGG: sco:SCO2169 integral membrane protein.
  
     0.422
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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