STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0944PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein. (392 aa)    
Predicted Functional Partners:
Acel_0942
KEGG: sco:SCO2325 integral membrane protein.
 
 
 0.998
Acel_0943
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV5847 putative ABC transporter ATP-binding subunit.
 
 0.997
Acel_1671
PFAM: BioY protein; KEGG: sma:SAV5421 putative biotin synthase.
  
 0.975
Acel_0946
TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: sco:SCO2321 secreted protein.
 
     0.905
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
  
 0.844
Acel_0941
Adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis enzyme; KEGG: tfu:Tfu_0997 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase.
  
  
 0.830
cobS
Cobalamin-5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
  
 0.820
Acel_1120
KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.816
Acel_0945
KEGG: sco:SCO2322 secreted protein.
       0.810
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.624
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.