Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_0953KEGG: sma:SAV6002 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Acel_0951
KEGG: fra:Francci3_2229 conserved hypothetical protein.
 
     0.951
Acel_0950
Phage shock protein A, PspA; PFAM: Snf7; PspA/IM30 family protein; KEGG: sco:SCO2168 putative phage shock protein A.
 
     0.950
htpX
Heat shock protein; PFAM: peptidase M48, Ste24p; KEGG: fra:Francci3_2230 peptidase M48, Ste24p; Metallo peptidase; MEROPS family M48B; Belongs to the peptidase M48B family.
 
     0.945
Acel_1797
KEGG: sma:SAV3104 hypothetical protein.
  
     0.617
Acel_0954
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nfa:nfa17050 hypothetical protein; Belongs to the HesB/IscA family.
       0.572
Acel_1419
KEGG: sco:SCO5843 hypothetical protein.
  
     0.419
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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