STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1141KEGG: sco:SCO1839 transcriptional regulator. (72 aa)    
Predicted Functional Partners:
Acel_1369
PFAM: sporulation and cell division protein SsgA; KEGG: sco:SCO1541 regulator.
  
     0.737
Acel_1303
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sma:SAV6861 DNA-binding protein.
  
     0.724
Acel_2023
KEGG: fra:Francci3_0945 hypothetical protein.
  
     0.641
Acel_2136
KEGG: fra:Francci3_4527 conserved hypothetical protein.
  
     0.632
Acel_0209
KEGG: nfa:nfa4030 hypothetical protein.
  
     0.599
Acel_0060
PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416.
  
     0.591
Acel_0065
KEGG: sma:SAV4026 AmfC protein.
  
     0.545
Acel_2009
Acylaminoacyl-peptidase; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: sma:SAV4564 peptidase.
  
     0.545
Acel_0693
PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein.
  
     0.530
Acel_0565
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sco:SCO5244 anti-sigma factor.
  
     0.520
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.