STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1286PFAM: regulatory protein, AsnC/Lrp family; KEGG: fra:Francci3_3779 transcriptional regulator, AsnC family. (164 aa)    
Predicted Functional Partners:
Acel_1287
PFAM: aminotransferase class-III; KEGG: tfu:Tfu_0278 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.934
Acel_1280
PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2058 hypothetical protein.
 
     0.776
Acel_1283
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: tfu:Tfu_0281 putative polyamine-binding lipoprotein.
 
     0.670
Acel_1282
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_0282 polyamine ABC-transporter, inner membrane subunit.
 
     0.613
Acel_1288
TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: nfa:nfa16250 putative L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
     
 0.599
Acel_1281
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_0283 polyamine ABC-transporter, inner membrane subunit.
 
     0.597
Acel_1285
PFAM: aldehyde dehydrogenase; KEGG: fra:Francci3_3777 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.510
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.451
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.