STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Acel_1371PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: fra:Francci3_1911 ErfK/YbiS/YcfS/YnhG. (522 aa)    
Predicted Functional Partners:
Acel_0693
PFAM: Methionine synthase, vitamin-B12 independent; KEGG: tfu:Tfu_0602 hypothetical protein.
  
     0.747
Acel_1988
PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: tfu:Tfu_0120 putative serine protease.
 
     0.676
Acel_2134
KEGG: sma:SAV4293 transmembrane protein.
  
     0.586
Acel_2150
PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase/autolysin; KEGG: fra:Francci3_4538 cell wall hydrolase/autolysin.
 
   
 0.571
Acel_0060
PFAM: protein of unknown function DUF1416; KEGG: fra:Francci3_0450 protein of unknown function DUF1416.
  
     0.570
Acel_0882
KEGG: tfu:Tfu_1965 hypothetical protein.
  
     0.543
Acel_1370
KEGG: sme:SMa2103 possible sulfite oxidase.
       0.536
Acel_0792
KEGG: sma:SAV5589 hypothetical protein.
  
     0.531
Acel_2001
Arsenite efflux ATP-binding protein ArsA; KEGG: tfu:Tfu_0112 putative ion-transporting ATPase; TC 3.A.4.1.1.
  
     0.487
Acel_2004
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; PASTA domain containing protein; KEGG: tfu:Tfu_0109 PASTA.
      
 0.468
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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