STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1383PFAM: protein of unknown function DUF6, transmembrane; KEGG: sco:SCO1313 integral membrane protein. (283 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.645
Acel_1381
UDP-galactopyranose mutase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.624
Acel_1380
PFAM: Chlorite dismutase; KEGG: tfu:Tfu_1896 hypothetical protein.
       0.603
Acel_1384
KEGG: fra:Francci3_2601 putative ABC transporter permease.
       0.516
Acel_1385
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nfa:nfa43630 putative ABC transporter ATP-binding protein.
       0.516
Acel_1101
PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: bte:BTH_II0234 class III extradiol-type catecholic dioxygenase, putative.
  
     0.498
Acel_1097
PFAM: Acetoacetate decarboxylase; KEGG: nar:Saro_2597 acetoacetate decarboxylase.
  
     0.479
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.