STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1397Amino acid/polyamine/organocation transporter, APC superfamily; KEGG: sco:SCO5900 probable membrane protein; TC 2.A.3. (674 aa)    
Predicted Functional Partners:
Acel_1400
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: sma:SAV2394 hypothetical protein.
 
     0.818
Acel_1396
23S rRNA m(5)U-1939 methyltransferase; TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; conserved hypothetical protein 95; (Uracil-5)-methyltransferase; KEGG: tfu:Tfu_1927 23S rRNA methyltransferase/RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.798
Acel_1395
KEGG: mtc:MT1828 hypothetical protein.
       0.773
Acel_0678
KEGG: fra:Francci3_3679 trehalose synthase-like; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.752
glgE
Alpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.752
Acel_1398
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sco:SCO5876 potassium uptake protein.
 
   
 0.707
Acel_1399
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sma:SAV2392 putative potassium transporter.
 
   
 0.686
Acel_1394
Aconitase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: fra:Francci3_1312 aconitate hydratase 1.
   
 
 0.545
Acel_0045
PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO7425 multidrug-efflux transporter protein.
  
     0.449
Acel_0865
KEGG: sco:SCO2045 hypothetical protein.
  
     0.427
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.