Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1408KEGG: sco:SCO5855 DNA-binding protein. (313 aa)    
Predicted Functional Partners:
Acel_1404
KEGG: tfu:Tfu_1939 hypothetical protein.
 
     0.776
Acel_1908
PFAM: Septum formation initiator; KEGG: sma:SAV3532 hypothetical protein.
  
     0.734
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
   
 0.655
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.619
Acel_0925
KEGG: mpa:MAP1960 hypothetical protein.
  
   
 0.591
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
   
 0.586
Acel_1386
KEGG: sco:SCO6030 hypothetical protein.
  
     0.568
Acel_1223
Transcriptional regulator, MerR family; SMART: regulatory protein, MerR; KEGG: mpa:MAP1543 hypothetical protein.
  
     0.563
Acel_0209
KEGG: nfa:nfa4030 hypothetical protein.
  
     0.545
Acel_1974
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sma:SAV4615 anti-sigma factor.
  
    0.543
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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