STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1409PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sco:SCO6995 protease. (395 aa)    
Predicted Functional Partners:
Acel_1412
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sco:SCO6994 hypothetical protein.
 
     0.893
Acel_1410
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; KEGG: sco:SCO6996 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.859
Acel_1411
KEGG: sco:SCO6997 hypothetical protein.
 
     0.844
Acel_1389
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sma:SAV3319 subtilisin-like protease.
  
     0.635
Acel_1036
KEGG: mpa:MAP1284 hypothetical protein.
  
     0.575
Acel_0960
KEGG: gsu:GSU1251 BNR repeat domain protein.
   
 
 0.558
Acel_0567
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: sma:SAV2987 signal peptidase protein.
  
     0.556
Acel_1895
KEGG: lxx:Lxx04330 hypothetical protein.
  
     0.553
Acel_1741
FHA domain containing protein; PFAM: Forkhead-associated protein; cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: fra:Francci3_0412 cell divisionFtsK/SpoIIIE.
 
 
 0.528
Acel_1904
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: oih:OB2375 intracellular alkaline serine proteinase.
  
     0.523
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.