Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplI | rplM | Acel_2130 | Acel_0341 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| rplI | rplR | Acel_2130 | Acel_0322 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplI | rplU | Acel_2130 | Acel_0756 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplI | rpmB | Acel_2130 | Acel_1582 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | PFAM: ribosomal protein L28; KEGG: fra:Francci3_3608 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |
| rplI | rpmE | Acel_2130 | Acel_0640 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.982 |
| rplI | rpmG | Acel_2130 | Acel_0287 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | PFAM: ribosomal protein L33; KEGG: mpa:MAP4106 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.995 |
| rplI | rpsF | Acel_2130 | Acel_2133 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplI | rpsO | Acel_2130 | Acel_1509 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.994 |
| rplI | rpsT | Acel_2130 | Acel_0776 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.990 |
| rplI | rpsZ | Acel_2130 | Acel_0319 | LSU ribosomal protein L9P; Binds to the 23S rRNA. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.995 |
| rplM | rplI | Acel_0341 | Acel_2130 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L9P; Binds to the 23S rRNA. | 0.998 |
| rplM | rplR | Acel_0341 | Acel_0322 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplM | rplU | Acel_0341 | Acel_0756 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rpmB | Acel_0341 | Acel_1582 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L28; KEGG: fra:Francci3_3608 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| rplM | rpmE | Acel_0341 | Acel_0640 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L31P; Binds the 23S rRNA. | 0.996 |
| rplM | rpmG | Acel_0341 | Acel_0287 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L33; KEGG: mpa:MAP4106 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.996 |
| rplM | rpsF | Acel_0341 | Acel_2133 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplM | rpsO | Acel_0341 | Acel_1509 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.997 |
| rplM | rpsT | Acel_0341 | Acel_0776 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.997 |
| rplM | rpsZ | Acel_0341 | Acel_0319 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.997 |
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