STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1695PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sma:SAV1652 squalene/phytoene dehydrogenase. (486 aa)    
Predicted Functional Partners:
Acel_1694
PFAM: Squalene/phytoene synthase; KEGG: fra:Francci3_0820 squalene/phytoene synthase.
  
 0.995
Acel_1693
PFAM: Squalene/phytoene synthase; KEGG: fra:Francci3_0819 squalene/phytoene synthase.
 
  
 0.965
Acel_1696
PFAM: Polyprenyl synthetase; KEGG: fra:Francci3_0822 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
   
 0.917
Acel_1697
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: fra:Francci3_0823 squalene cyclase.
 
   
 0.917
Acel_1699
PFAM: Radical SAM domain protein; KEGG: sco:SCO6766 hypothetical protein.
 
    0.908
Acel_1698
Hypothetical protein; KEGG: fra:Francci3_0824 hydroxymethylbutenyl pyrophosphate reductase.
       0.620
Acel_1955
KEGG: sco:SCO1685 integral membrane protein.
  
     0.605
Acel_0485
KEGG: fra:Francci3_2900 putative integral membrane protein.
  
     0.537
Acel_1692
Putative nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
       0.523
Acel_1700
PFAM: protein of unknown function UPF0118; KEGG: fra:Francci3_1161 protein of unknown function UPF0118.
       0.442
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.