Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1708Hypothetical protein. (103 aa)    
Predicted Functional Partners:
Acel_1707
Hypothetical protein.
       0.550
Acel_1705
PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: pac:PPA1654 putative cobyric acid synthase CobQ.
       0.543
Acel_1706
PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; KEGG: sco:SCO1212 ligase.
       0.543
Acel_1704
PFAM: protein of unknown function DUF179; KEGG: sco:SCO2948 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.457
Acel_1703
KEGG: sco:SCO2947 hypothetical protein.
       0.431
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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