Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1734KEGG: fra:Francci3_0784 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Acel_1736
KEGG: fra:Francci3_0782 hypothetical protein.
 
     0.942
Acel_1738
PFAM: type II secretion system protein; KEGG: fra:Francci3_0780 type II secretion system protein.
 
     0.903
Acel_1737
PFAM: type II secretion system protein; KEGG: fra:Francci3_0781 type II secretion system protein.
 
     0.899
Acel_1733
KEGG: fra:Francci3_0788 hypothetical protein.
       0.799
Acel_1752
KEGG: fra:Francci3_0773 ATPases involved in chromosome partitioning-like.
  
     0.774
Acel_1753
KEGG: fra:Francci3_0772 hypothetical protein.
  
     0.774
Acel_1735
PFAM: TadE family protein; KEGG: fra:Francci3_0783 TadE-like.
       0.773
Acel_1755
KEGG: fra:Francci3_0770 hypothetical protein.
  
     0.773
Acel_1754
TIGRFAM: DNA binding domain, excisionase family; KEGG: fra:Francci3_0771 putative transcriptional regulator.
  
     0.767
Acel_1756
KEGG: fra:Francci3_0769 hypothetical protein.
  
     0.759
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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