STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1736KEGG: fra:Francci3_0782 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Acel_1734
KEGG: fra:Francci3_0784 hypothetical protein.
 
     0.942
Acel_1738
PFAM: type II secretion system protein; KEGG: fra:Francci3_0780 type II secretion system protein.
 
     0.885
Acel_1737
PFAM: type II secretion system protein; KEGG: fra:Francci3_0781 type II secretion system protein.
 
     0.881
Acel_1733
KEGG: fra:Francci3_0788 hypothetical protein.
       0.773
Acel_1735
PFAM: TadE family protein; KEGG: fra:Francci3_0783 TadE-like.
       0.773
Acel_1752
KEGG: fra:Francci3_0773 ATPases involved in chromosome partitioning-like.
  
     0.763
Acel_1754
TIGRFAM: DNA binding domain, excisionase family; KEGG: fra:Francci3_0771 putative transcriptional regulator.
  
     0.748
Acel_1753
KEGG: fra:Francci3_0772 hypothetical protein.
  
     0.743
Acel_1739
PFAM: type II secretion system protein E; KEGG: fra:Francci3_0779 type II secretion system protein E.
 
     0.742
Acel_1755
KEGG: fra:Francci3_0770 hypothetical protein.
  
     0.691
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.