Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1767KEGG: fra:Francci3_1839 hypothetical protein. (59 aa)    
Predicted Functional Partners:
Acel_1039
PFAM: oxidoreductase domain protein.
  
     0.704
Acel_0585
KEGG: tfu:Tfu_0565 hypothetical protein.
  
     0.535
Acel_1768
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: fra:Francci3_3787 UBA/ThiF-type NAD/FAD binding fold.
       0.530
Acel_1769
PFAM: ABC-1 domain protein; KEGG: fra:Francci3_3788 ABC-1.
       0.501
Acel_1835
KEGG: fra:Francci3_3837 conserved hypothetical protein.
  
     0.482
Acel_1766
PFAM: protein of unknown function DUF45; KEGG: sco:SCO5194 hypothetical protein.
       0.476
Acel_2000
KEGG: sma:SAV4587 hypothetical protein.
  
     0.464
Acel_1857
PFAM: GCN5-related N-acetyltransferase; FR47 domain protein; KEGG: sco:SCO5134 hypothetical protein.
  
     0.411
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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