Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acel_1796PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sma:SAV3103 hypothetical protein. (284 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      0.902
Acel_1795
PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sma:SAV3102 putative integral membrane protein.
       0.817
Acel_1797
KEGG: sma:SAV3104 hypothetical protein.
       0.721
Acel_1405
PFAM: inositol monophosphatase; KEGG: tfu:Tfu_1943 inositol-1(or 4)-monophosphatase.
      0.709
Acel_1794
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nfa:nfa24510 putative arsenate reductase.
       0.619
Acel_1798
Transcriptional regulator, LacI family; PFAM: NUDIX hydrolase; regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_0938 regulatory protein, LacI.
  
    0.471
Acel_1792
PFAM: CheW domain protein; KEGG: rpb:RPB_3919 CheW protein.
       0.420
Acel_1793
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpb:RPB_3920 CheA-like signal transduction histidine kinase.
       0.419
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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