STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1915Hypothetical protein. (100 aa)    
Predicted Functional Partners:
Acel_1916
PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_4086 glycosyl transferase, group 1.
       0.773
Acel_1917
PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase.
       0.773
Acel_1914
TIGRFAM: LPXTG-motif cell wall anchor domain; Twin-arginine translocation pathway signal; KEGG: mca:MCA1217 metalloprotease, putative.
       0.484
Acel_1918
Hypothetical protein; KEGG: rru:Rru_A1280 HPr kinase.
       0.468
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.