STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1920PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1562 glycosyl transferase, group 1. (481 aa)    
Predicted Functional Partners:
Acel_1921
KEGG: sma:SAV5969 hypothetical protein.
 
     0.804
Acel_1919
KEGG: hch:HCH_06056 hypothetical protein.
       0.773
Acel_1933
KEGG: ret:RHE_CH01374 hypothetical protein.
  
     0.747
Acel_1927
PFAM: O-antigen polymerase; KEGG: fra:Francci3_1569 O-antigen polymerase.
 
  
 0.718
Acel_1922
PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV5970 transmembrane efflux protein.
 
     0.693
Acel_1924
KEGG: ret:RHE_CH01372 hypothetical protein.
  
     0.679
Acel_1936
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ret:RHE_CH01367 probable UDP-glucose 4-epimerase protein.
  
    0.634
Acel_1942
PFAM: glycosyl transferase, family 2; KEGG: fra:Francci3_1573 glycosyl transferase, family 2.
     0.616
Acel_1937
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase, C-terminal domain; KEGG: ret:RHE_CH01364 probable oxidoreductase protein.
  
    0.547
Acel_1374
Maltooligosyl trehalose hydrolase; KEGG: sco:SCO6078 alpha amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.451
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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