STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1930PFAM: ABC-2 type transporter; KEGG: sso:SSO2646 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Acel_1931
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A3370 ABC transporter, ATP-binding protein.
  
    0.823
Acel_1929
PFAM: glycosyl transferase, group 1; KEGG: syd:Syncc9605_0169 glycosyltransferase-like.
 
     0.801
Acel_1932
PFAM: glycosyl transferase, family 2; KEGG: atc:AGR_L_153 hypothetical protein.
       0.773
Acel_1933
KEGG: ret:RHE_CH01374 hypothetical protein.
       0.668
Acel_1934
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.668
Acel_1935
KEGG: tte:TTE0666 acetyltransferase (the isoleucine patch superfamily).
       0.668
Acel_1936
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: ret:RHE_CH01367 probable UDP-glucose 4-epimerase protein.
  
    0.668
Acel_1937
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase, C-terminal domain; KEGG: ret:RHE_CH01364 probable oxidoreductase protein.
       0.668
Acel_1938
PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ret:RHE_CH01368 probable aminotransferase protein (involved in cell wall biogenesis); Belongs to the DegT/DnrJ/EryC1 family.
       0.668
Acel_1927
PFAM: O-antigen polymerase; KEGG: fra:Francci3_1569 O-antigen polymerase.
       0.623
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.