STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1986PFAM: electron transport protein SCO1/SenC; KEGG: bbr:BB4821 SCO1/SenC family protein. (271 aa)    
Predicted Functional Partners:
Acel_0956
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.858
Acel_1992
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Redoxin domain protein; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
  
 
 0.819
Acel_1987
KEGG: fra:Francci3_2497 putative copper resistance protein D.
     
 0.798
Acel_1133
PFAM: cytochrome oxidase assembly; KEGG: sma:SAV6320 putative integral membrane transport protein.
  
 
 0.594
Acel_1988
PFAM: peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein; KEGG: tfu:Tfu_0120 putative serine protease.
       0.457
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
 0.435
Acel_0251
PFAM: Redoxin domain protein; KEGG: tfu:Tfu_2704 hypothetical protein.
  
     0.406
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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