STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1989PFAM: protein of unknown function DUF309; KEGG: nfa:nfa2700 hypothetical protein. (184 aa)    
Predicted Functional Partners:
Acel_1990
PFAM: alpha/beta hydrolase fold; KEGG: fra:Francci3_4293 alpha/beta hydrolase fold.
      0.956
Acel_1531
PFAM: amino acid-binding ACT domain protein; KEGG: fra:Francci3_3646 amino acid-binding ACT.
  
     0.655
Acel_1991
PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0119 hypothetical protein.
       0.649
Acel_1992
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Redoxin domain protein; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
       0.576
nth
DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.535
Acel_0209
KEGG: nfa:nfa4030 hypothetical protein.
  
     0.451
Acel_1249
KEGG: sma:SAV6494 hypothetical protein.
  
     0.447
Acel_2023
KEGG: fra:Francci3_0945 hypothetical protein.
  
     0.417
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.