STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1990PFAM: alpha/beta hydrolase fold; KEGG: fra:Francci3_4293 alpha/beta hydrolase fold. (308 aa)    
Predicted Functional Partners:
Acel_1989
PFAM: protein of unknown function DUF309; KEGG: nfa:nfa2700 hypothetical protein.
      0.956
Acel_1991
PFAM: NUDIX hydrolase; KEGG: tfu:Tfu_0119 hypothetical protein.
 
  
  0.748
Acel_1352
KEGG: sma:SAV6829 secreted protein.
  
     0.656
Acel_1992
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Redoxin domain protein; KEGG: ttj:TTHA1728 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
   
 
 0.612
Acel_0972
PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_3098 glycosyl transferase, group 1.
  
    0.584
Acel_1778
PFAM: alpha/beta hydrolase fold; KEGG: sco:SCO5172 hydrolase.
  
     0.583
Acel_1353
Phosphatidylinositol alpha-mannosyltransferase; PFAM: glycosyl transferase, group 1; KEGG: tfu:Tfu_2101 phosphatidyl-myo-inositol alpha-mannosyltransferase.
  
    0.551
nth
DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.549
Acel_1038
PFAM: cytochrome P450; KEGG: bps:BPSS1654 cytochrome P450.
 
 0.545
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.