STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_1997PFAM: beta-lactamase domain protein; KEGG: sma:SAV4590 hydrolase. (268 aa)    
Predicted Functional Partners:
Acel_1998
PFAM: NUDIX hydrolase; KEGG: fra:Francci3_4283 NUDIX hydrolase.
 
     0.857
Acel_1108
PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like.
  
     0.695
Acel_1999
PFAM: Endoribonuclease L-PSP; KEGG: tfu:Tfu_0114 hypothetical protein.
  
    0.608
Acel_2000
KEGG: sma:SAV4587 hypothetical protein.
       0.589
Acel_2001
Arsenite efflux ATP-binding protein ArsA; KEGG: tfu:Tfu_0112 putative ion-transporting ATPase; TC 3.A.4.1.1.
       0.490
Acel_1777
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sco:SCO5178 putative sulfurylase.
  
 
 0.457
Acel_1962
Coenzyme F420-0 gamma-glutamyl ligase; TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: nitroreductase; protein of unknown function DUF129; KEGG: sco:SCO3037 putative oxidoreductase.
 
  
 0.423
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.