STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_2050PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sco:SCO0293 putative beta-xylosidase; Belongs to the glycosyl hydrolase 3 family. (817 aa)    
Predicted Functional Partners:
Acel_2049
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV4979 putative sugar transporter solute-binding protein; TC 3.A.1.1.-.
 
     0.649
Acel_0372
PFAM: glycoside hydrolase, family 10; KEGG: tfu:Tfu_2791 endo-1,4-beta-xylanase.
 
   
 0.619
Acel_0180
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10); PFAM: glycoside hydrolase, family 10; cellulose-binding, family II; type 3a, cellulose-binding domain protein; KEGG: tfu:Tfu_2923 glycoside hydrolase, family 10:cellulose-binding, family II, bacterial type.
 
   
 0.579
Acel_0616
PFAM: glycoside hydrolase, family 5; cellulose-binding, family II; type 3a, cellulose-binding domain protein; KEGG: bld:BLi01883 hypothetical protein.
 
   
 0.483
Acel_2051
PFAM: chemotaxis sensory transducer; KEGG: mag:amb3701 methyl-accepting chemotaxis protein.
       0.480
Acel_0614
Glycoside hydrolase, family 5; Has a very high specific activity on carboxymethylcellulose.
 
   
 0.456
Acel_1520
KEGG: cef:CE2653 hypothetical protein.
  
  
 0.450
Acel_2046
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tfu:Tfu_2790 regulatory protein, LacI.
 
     0.444
Acel_0618
PFAM: cellulose-binding, family II; type 3a, cellulose-binding domain protein; glycosyl hydrolase, BNR repeat-containing protein; Fibronectin, type III domain protein; KEGG: tfu:Tfu_1612 cellulose-binding, family II, bacterial type.
  
   
 0.435
Acel_2052
Cysteinyl-tRNA synthetase-like protein; KEGG: hal:VNG1097G cysteinyl-tRNA synthetase.
       0.419
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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