STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_2068TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: tfu:Tfu_2751 excisionase/Xis, DNA-binding. (69 aa)    
Predicted Functional Partners:
Acel_2066
PFAM: Vitamin K epoxide reductase; KEGG: sai:Saci_1138 conserved crenarchaeal membrane protein.
 
     0.545
Acel_1352
KEGG: sma:SAV6829 secreted protein.
  
     0.482
Acel_2067
KEGG: sso:SSO1873 hypothetical protein.
       0.482
Acel_2108
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO3975 regulator.
  
     0.463
Acel_1775
PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_0524 putative DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
    0.461
Acel_2019
KEGG: tfu:Tfu_0026 hypothetical protein.
  
     0.412
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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