STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_2089PFAM: ABC-3 protein; KEGG: fra:Francci3_2476 ABC-3. (287 aa)    
Predicted Functional Partners:
Acel_2087
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_2478 ABC transporter related.
 
 0.998
Acel_2086
PFAM: periplasmic solute binding protein; KEGG: fra:Francci3_2479 periplasmic solute binding protein.
 
  
 0.986
Acel_2088
PFAM: ABC-3 protein; KEGG: fra:Francci3_2477 ABC-3.
 
  
 
0.879
Acel_2085
Zinc uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 putative metal uptake regulation protein; Belongs to the Fur family.
  
  
 0.728
Acel_1640
KEGG: bja:blr4464 probable ABC transporter ATP-binding/permease protein; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SMC domain protein; ABC transporter related; SMART: AAA ATPase; TC 3.A.1.3.-; 3.A.1.3.-.
 
  
 0.694
Acel_2090
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: mta:Moth_1554 type II secretion system protein E.
       0.536
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
  
 0.464
Acel_1116
PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV874 solute-binding dependent transport lipoprotein.
  
  
  0.458
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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