STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acel_2090PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: mta:Moth_1554 type II secretion system protein E. (573 aa)    
Predicted Functional Partners:
Acel_1320
PFAM: type II secretion system protein; KEGG: gsu:GSU1493 type IV pilus biogenesis protein PilC.
 
 0.942
Acel_1314
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.833
Acel_1318
Secretory protein; KEGG: tel:tll1011 pilin polypeptide PilA homolog.
  
 
 0.634
Acel_1319
Secretory protein; KEGG: chy:CHY_0633 general secretion pathway protein G.
  
 
 0.634
Acel_2086
PFAM: periplasmic solute binding protein; KEGG: fra:Francci3_2479 periplasmic solute binding protein.
       0.536
Acel_2087
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fra:Francci3_2478 ABC transporter related.
       0.536
Acel_2088
PFAM: ABC-3 protein; KEGG: fra:Francci3_2477 ABC-3.
       0.536
Acel_2089
PFAM: ABC-3 protein; KEGG: fra:Francci3_2476 ABC-3.
       0.536
Acel_1313
TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA; KEGG: gme:Gmet_0971 type IV pilus assembly protein PilM.
 
 
 
 0.498
Acel_2091
PFAM: protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_2203 protein of unknown function DUF6, transmembrane.
       0.465
Your Current Organism:
Acidothermus cellulolyticus
NCBI taxonomy Id: 351607
Other names: A. cellulolyticus 11B, Acidothermus cellulolyticus 11B, Acidothermus cellulolyticus str. 11B, Acidothermus cellulolyticus strain 11B
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