STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0129PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family. (813 aa)    
Predicted Functional Partners:
Csac_2441
PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
   
    0.580
Csac_2539
PFAM: glycoside hydrolase, family 20.
 
 
 0.517
Csac_1354
PFAM: glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.499
Csac_1560
PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.499
Csac_0127
PFAM: binding-protein-dependent transport systems inner membrane component.
  
    0.491
Csac_0420
PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding.
  
     0.490
Csac_0128
PFAM: binding-protein-dependent transport systems inner membrane component.
       0.484
Csac_2436
PFAM: Acetyl xylan esterase.
 
     0.478
Csac_0424
Hypothetical protein.
  
  
 0.410
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.