STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0144PFAM: ABC transporter related; SMART: AAA ATPase. (313 aa)    
Predicted Functional Partners:
Csac_2188
PFAM: ABC-2 type transporter.
 
 
  
 0.921
Csac_0145
Hypothetical protein.
 
 
 0.914
Csac_0141
PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.699
Csac_0140
PFAM: regulatory protein GntR, HTH.
  
  
 0.674
Csac_0143
Hypothetical protein.
       0.668
Csac_0142
Hypothetical protein.
       0.625
Csac_0365
Hypothetical protein.
 
 
 0.473
Csac_0163
Hypothetical protein.
  
 
 0.448
Csac_0700
PFAM: ABC-2 type transporter.
   
 
 0.402
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.