STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBPFAM: carbohydrate kinase, FGGY. (499 aa)    
Predicted Functional Partners:
Csac_0723
PFAM: class II aldolase/adducin family protein.
 
 
 0.954
Csac_2074
PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.949
Csac_1154
PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.921
xylB-2
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY.
  
  
 
0.913
Csac_0349
TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase, class-II.
  
  
 0.734
rhaA
PFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
  
  
 0.712
Csac_0347
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein.
  
  
 0.665
uxaC
PFAM: Glucuronate isomerase.
     
 0.663
Csac_0350
PFAM: Xylose isomerase domain protein TIM barrel.
 
  
 0.642
Csac_0877
L-fucose isomerase like protein.
 
  
 0.619
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.