STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0350PFAM: Xylose isomerase domain protein TIM barrel. (303 aa)    
Predicted Functional Partners:
Csac_0351
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
    0.712
Csac_0349
TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase, class-II.
  
  
 0.690
xylB
PFAM: carbohydrate kinase, FGGY.
 
  
 0.642
Csac_1323
PFAM: protein of unknown function DUF362.
  
     0.517
Csac_0347
Transcriptional regulator, DeoR family; PFAM: regulatory protein, DeoR; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein.
  
    0.500
Csac_1170
PFAM: major facilitator superfamily MFS_1.
 
    0.425
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.