STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0506PFAM: protein of unknown function DUF214. (656 aa)    
Predicted Functional Partners:
Csac_0507
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.982
Csac_0508
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein.
 
 
 
 0.911
Csac_0509
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein.
 
     0.899
Csac_0528
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.787
Csac_0660
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.565
Csac_2447
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.565
Csac_0646
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.564
Csac_0510
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2.
 
    0.422
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.