STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0717PFAM: protein of unknown function DUF1680. (653 aa)    
Predicted Functional Partners:
Csac_1561
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein.
 
   
 0.795
Csac_1556
PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein.
 
     0.706
Csac_1340
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase).
  
     0.595
Csac_1354
PFAM: glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
 
     0.564
Csac_0718
Ethanolamine utilization like protein.
       0.550
Csac_1560
PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.540
Csac_0716
PFAM: Cl- channel, voltage-gated family protein; TrkA-C domain protein.
       0.460
Csac_2412
PFAM: extracellular solute-binding protein, family 1.
  
     0.456
Csac_2411
PFAM: Carbohydrate-binding, CenC domain protein domain protein; Carbohydrate binding family 6; glycoside hydrolase, family 43; SMART: cellulose binding, type IV.
 
   
 0.443
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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