STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0799TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region. (496 aa)    
Predicted Functional Partners:
Csac_2058
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GAF domain protein.
 
 0.979
Csac_0756
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein.
 
   0.885
Csac_2384
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein.
 
 0.855
Csac_0020
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.812
Csac_0377
Putative diguanylate cyclase.
  
   0.752
Csac_0821
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein.
 
 0.747
Csac_0219
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein.
   
 0.731
Csac_0800
Response regulator receiver and ANTAR domain protein; PFAM: ANTAR domain protein.
       0.588
Csac_0801
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26.
       0.569
Csac_0802
PFAM: MscS Mechanosensitive ion channel.
       0.569
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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