STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_0866PFAM: class II aldolase/adducin family protein. (351 aa)    
Predicted Functional Partners:
Csac_0868
PFAM: short-chain dehydrogenase/reductase SDR.
 
     0.873
Csac_0865
PFAM: class II aldolase/adducin family protein.
 
   
 0.788
Csac_0874
PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein.
 
     0.758
Csac_0867
Hypothetical protein.
 
     0.751
Csac_0989
PFAM: carbohydrate kinase, FGGY.
   
 0.726
Csac_0872
PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein.
  
     0.546
Csac_0334
Hypothetical protein; Required for the transposition of the insertion element.
  
     0.539
Csac_0869
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
     0.519
Csac_0271
PFAM: Radical SAM domain protein.
  
     0.510
Csac_0612
PFAM: Lysine exporter protein (LYSE/YGGA).
  
     0.476
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.