STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1065PFAM: peptidase A24A domain protein. (258 aa)    
Predicted Functional Partners:
Csac_1062
PFAM: type II secretion system protein.
 
  
 0.930
Csac_1060
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
 
 
 0.920
Csac_1061
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.892
Csac_1064
Hypothetical protein.
 
  
 0.872
Csac_1063
Hypothetical protein.
 
  
 0.820
Csac_1069
Tfp pilus assembly protein ATPase PilM-like protein.
 
  
 0.820
Csac_1066
Hypothetical protein.
  
    0.818
Csac_1067
Hypothetical protein.
     
 0.804
Csac_1068
Hypothetical protein.
       0.773
Csac_1024
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein.
 
  
 0.677
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.