STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1236PFAM: DNA polymerase, beta domain protein region. (145 aa)    
Predicted Functional Partners:
Csac_1673
PFAM: protein of unknown function DUF86.
 
 
 
 0.866
Csac_1669
PFAM: protein of unknown function DUF86.
 
 
 
 0.865
Csac_0588
PFAM: DNA polymerase, beta domain protein region.
  
     0.570
Csac_2340
Hypothetical protein.
  
     0.533
Csac_0518
PFAM: protein of unknown function DUF86.
   
 
 0.429
Csac_1237
Transposase, IS605 OrfB; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB.
       0.410
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.