STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1421Hypothetical protein. (228 aa)    
Predicted Functional Partners:
Csac_1278
PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase.
  
 
 0.850
Csac_1426
Hypothetical protein.
  
  
 0.789
Csac_1423
PFAM: peptidase A24A, prepilin type IV.
     
 0.769
Csac_1422
ATPase involved in chromosome partitioning-like protein.
       0.762
Csac_1424
Hypothetical protein.
       0.762
Csac_1425
Hypothetical protein.
       0.762
Csac_1419
Hypothetical protein.
       0.723
Csac_1420
Hypothetical protein.
       0.723
Csac_1428
PFAM: type II secretion system protein E.
  
  
 0.671
Csac_1427
ATPase involved in chromosome partitioning-like protein.
  
  
 0.642
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.