STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1553Hypothetical protein. (221 aa)    
Predicted Functional Partners:
Csac_1552
PFAM: VanW family protein; G5 domain protein.
 
     0.810
Csac_1295
PFAM: CheC domain protein.
 
     0.739
Csac_1550
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding.
       0.736
Csac_1551
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase.
       0.736
Csac_1286
PFAM: protein of unknown function DUF342.
 
     0.719
Csac_1280
PFAM: type IV pilus assembly PilZ.
  
     0.696
Csac_0742
PFAM: protein of unknown function DUF327.
 
     0.666
Csac_1662
PFAM: Anti-sigma-28 factor, FlgM family protein.
  
     0.663
Csac_1549
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
       0.624
Csac_1661
Hypothetical protein.
  
     0.608
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.