STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1939PFAM: ABC transporter related; SMART: AAA ATPase. (234 aa)    
Predicted Functional Partners:
Csac_1941
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Csac_1942
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Csac_1940
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
0.995
Csac_1943
PFAM: Extracellular ligand-binding receptor.
 
 
 0.992
Csac_2453
PFAM: Extracellular ligand-binding receptor.
 
 
 0.984
Csac_1128
PFAM: ABC transporter related; SMART: AAA ATPase.
 
     
0.798
Csac_2473
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.749
Csac_2178
PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.702
Csac_1011
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component.
 
    
 0.679
Csac_2474
PFAM: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.675
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.