STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1967Hypothetical protein. (283 aa)    
Predicted Functional Partners:
Csac_1966
PFAM: heat shock protein DnaJ domain protein; Tetratricopeptide TPR_2 repeat protein.
 
     0.944
Csac_0982
Hypothetical protein.
 
     0.806
Csac_1965
PFAM: peptidase M16 domain protein.
       0.752
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.707
Csac_1366
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
  
     0.648
Csac_1960
PFAM: aminotransferase, class I and II.
       0.625
Csac_1961
Putative transcriptional regulator, AsnC family; PFAM: regulatory protein, AsnC/Lrp family.
       0.625
Csac_1962
Hypothetical protein.
       0.625
Csac_1963
Hypothetical protein.
       0.625
Csac_2007
PFAM: single-strand binding protein/Primosomal replication protein n.
  
     0.579
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.