STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Csac_1982PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase. (404 aa)    
Predicted Functional Partners:
Csac_1983
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 0.975
Csac_0546
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.926
Csac_0580
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
 
  
 0.926
Csac_0402
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 0.875
Csac_2039
TIGRFAM: desulfoferrodoxin; PFAM: Desulfoferrodoxin, ferrous iron-binding region; Desulfoferrodoxin Dfx domain protein.
 
  
 0.676
Csac_1990
PFAM: Rubredoxin-type Fe(Cys)4 protein.
 
  
 0.587
Csac_0759
PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulfide oxidoreductase dimerisation region.
    
 0.528
Csac_1981
Hypothetical protein.
       0.523
Csac_0285
TIGRFAM: hemerythrin-like metal-binding protein.
  
  
 0.512
Csac_0461
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein.
  
  
 0.512
Your Current Organism:
Caldicellulosiruptor saccharolyticus
NCBI taxonomy Id: 351627
Other names: C. saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus DSM 8903, Caldicellulosiruptor saccharolyticus str. DSM 8903, Caldicellulosiruptor saccharolyticus strain DSM 8903
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